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In vitro evolution of the DNA binding si ... coli methionine repressor, MetJ
In vitro evolution of the DNA binding sites of Escherichia coli methionine repressor, MetJ.
54
The SELEX procedure was used to study the recognition between the E. coli methionine repressor (MetJ) and its DNA binding sites. DNA ligands with high affinity for either the holo-repressor or apo-repressor were isolated from a pool of molecules randomized over 20 base-pairs. Among 90 DNA ligands selected by holo-repressor binding, roughly 90% contain variations of two tandem, perfect eight base-pair Met-boxes, which are the consensus deduced from natural met operators. Base-pairs that are important, for specific interactions with the protein are highly conserved. The data also reveal the importance of the non-contacted operator base-pairs in facilitating the conformational changes in the operator which must occur for repressor binding. There are also effects due to the sequences of the base-pairs immediately flanking the operator site. DNA ligands selected by apo-repressor share a very similar, but not identical, consensus with that selected by holo-repressor, suggesting that the corepressor does not greatly alter the specificity of repressor binding.
He YY, Stockley PG, Gold L
Journal of molecular biology
1996-01-12 00:00
255
1
55-66
Bacterial Proteins,Base Composition,Base Sequence,Binding Sites,Conserved Sequence,DNA, Bacterial,Directed Molecular Evolution,Escherichia coli,Escherichia coli Proteins,Ligands,Molecular Sequence Data,Repressor Proteins,Sequence Analysis, DNA,Bacterial Proteins,DNA, Bacterial,Escherichia coli Proteins,Ligands,Repressor Proteins,methionine repressor protein, Bacteria,methionine repressor protein, E coli
Department of Molecular Cellular and Developmental Biology, University of Colorado at Boulder 80309, USA
J. Mol. Biol.
NIGMS GM-19963, NIGMS GM-28685
0022-2836
10.1006/jmbi.1996.0006
S0022-2836(96)90006-6
409
True
8568875
